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Plant & Animal Whole Genome Resequencing
Whole-genome re-sequencing products for animals and plants leverage advanced sequencing technologies to facilitate precise genetic mapping, aiding in species improvement, trait selection, and biodiversity conservation
Work flow
Technical Parameters
| Sequencing range | Whole genome region |
| Sequencing strategy | NGS PE150 |
| Sequencing throughput | 10x-30x |
| Data quality | Fastq files, Q30≥85% |
| Data analysis | Standard+advanced analysis |
| TAT | Standard: 25 WD |
Applications
| Genetic Diversity and Population Genetics Research | Breeding Improved Varieties | Ecological and Environmental Adaptability Research |
| Disease-Related Gene Identification | Functional Genomics Research | Conservation Genetics |
Bioinformatics Analysis
1. Process the original data to remove adapters, contaminating sequences and low-quality reads.
2. Data alignment using the BWA software and a reference genome.
3. Statistical analysis of data production, analysis of sequencing depth, and uniformity of coverage.
4. Detection of SNP variations using GATK.
5. Annotation of SNPs with RefGene.
6. Statistical analysis of the distribution of SNPs across various gene functional elements.
7. Detection of InDel variations using GATK.
8. Annotation of InDels with RefGene.
9. Statistical analysis of the distribution of InDels across various gene functional elements.
10. Detection and annotation of Structural Variations (SVs).
11. Detection and annotation of Copy Number Variations (CNVs).
2. Data alignment using the BWA software and a reference genome.
3. Statistical analysis of data production, analysis of sequencing depth, and uniformity of coverage.
4. Detection of SNP variations using GATK.
5. Annotation of SNPs with RefGene.
6. Statistical analysis of the distribution of SNPs across various gene functional elements.
7. Detection of InDel variations using GATK.
8. Annotation of InDels with RefGene.
9. Statistical analysis of the distribution of InDels across various gene functional elements.
10. Detection and annotation of Structural Variations (SVs).
11. Detection and annotation of Copy Number Variations (CNVs).
Advantages
Multiple sample types(FFPE, cfDNA, ctDNA)PCR/PCR free library construction provided100ng minimum DNA inputAdvanced analysis & customized analysis provided
Address
Units 610, 6/F, Building 16W, Phase 3, HongKong Science Park, New Territories, HongKong
Phone
+852 69410851
customer_service@haplox.net
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